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100+ results found
  1. Breast Cancer Wisconsin (Diagnostic) Data Set

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  2. Breast Cancer Wisconsin

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  3. Breast Cancer

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  4. Breast Cancer Prediction Dataset

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    Replication Data for: Wisconsin Breast Cancer Diagnostic

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    Gene Expression Profiles of Breast Cancer

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  11. Breast Cancer WI (Diagnostic)

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    Breast Cancer Dataset

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    Breast cancer data from TCGA for machine learning exercise

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    Replication Data for: Ljubljana Breast Cancer

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  16. Years of Life Lost (YLL): Breast cancer

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  17. Mortality from breast cancer in females (CCGOIS 1.20)

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    Breast Cancer Quality Performance Indicators

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    Diabetes and Breast Cancer Subtypes

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    Data from: Progression free survival in Iraqi breast cancer patients treated...

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    MAQC-II Project: human breast cancer (BR) data set

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    Data from: Human breast cancer associated fibroblasts exhibit subtype...

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    Data from: Characterization of individual foci of multicentric/multifocal...

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  25. Breast cancer: Mortality rate

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    A Physical Mechanism and Global Quantification of Breast Cancer

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  28. BREAST CANCER ALTERNATIVES INC, fiscal year ending Dec. 2016

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  29. Incidence of and mortality from breast cancer in England 2004 to 2017

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  30. Breast Cancer Wisconsin (Diagnostic)

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  31. Breast cancer and cervical cancer screenings

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    Primary breast cancer: ESMO Clinical Practice Guidelines for diagnosis,...

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  33. Breast Cancer Subclassification

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  34. Plasma metabolic fingerprint for breast cancer (MS) - part I

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    Data from: Modifiable patient-related barriers and their association with...

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  36. Duke Breast Cancer Dataset

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    Breast Cancer Tissue Bank Sample and Image Collection

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    Data from: Genomic Interaction Profiles in Breast Cancer Reveal Altered...

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    Breast Cancer Screening, Borough

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    Epigenome analysis of tumor adjacent normal tissue from breast cancer...

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  41. Breast cancer deaths, England and Wales, 1980 to 1989 registrations

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    Data from: CYP2D6*4 polymorphisms and breast cancer risk

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  43. BREAST CANCER ACTION, fiscal year ending June 2017

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  44. Premature deaths and age-standardised mortality rates from breast cancer by...

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    Data from: Comparative Study on Breast Cancer

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    BIOGRID CURATED DATA FOR PUBLICATION: Apigenin inhibits...

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  50. Number of people diagnosed with Lobular Breast Cancer, England, 2006 to 2016...

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    Breast Cancer Tissue Bank Blood Samples

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    Growth Factor Stimulation Induces a Distinct ERalpha Cistrome Underlying...

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    Examining the Pathogenesis of Breast Cancer Using a Novel Agent-Based Model...

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    Breast Ultrasound Image

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NKI Breast Cancer Data

GEO data set where we've limited the column list to the top varying genes.

  • Dataset published Dec 7, 2016
  • Dataset updated Oct 10, 2019
Dataset provided by
Data.World, Inc.http://www.data.world/
Authors
Devi Ramanan
Available download formats from providers
zip, csv
Description

272 breast cancer patients (as rows), 1570 columns. Network built using only gene expression. Meta data includes patient info, treatment, and survival.

Each node is a group of patients similar to each other. Flares (left) represent sub-populations that are distinct from the larger population. (One differentiating factor between the two flares is estrogen expression (low = top flare, high = bottom flare)). Bottom flare is a group of patients with 100% survival. Top flare shows a range of survival – very poor towards the tip (red), and very good near the base (circled).

The circled group of good survivors have genetic indicators of poor survivors (i.e. low ESR1 levels, which is typically the prognostic indicator of poor outcomes in breast cancer) – understanding this group could be critical for helping improve mortality rates for this disease. Why this group survived was quickly analysed by using the Outcome Column (here Event Death - which is binary - 0,1) as a Data Lens (which we term Supervised vs Unsupervised analyses).

Published in 2 papers - Nature and PNAS:

http://www.nature.com/articles/srep01236

https://d1bp1ynq8xms31.cloudfront.net/wp-content/uploads/2015/02/Topology_Based_Data_Analysis_Identifies_a_Subgroup_of_Breast_Cancer_with_a_unique_mutational_profile_and_excellent_survival.pdf

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